利用KASP标记评价水稻品种多态性

doi:10.19640/j.cnki.jtau.2018.04.004

Journal of Tianjin Agricultural University ›› 2018, Vol. 25 ›› Issue (4): 13-16.doi: 10.19640/j.cnki.jtau.2018.04.004

• Researches and Scientific Notes • Previous Articles Next Articles

Evaluation of rice variety polymorphisms using KASP markers

CHENG Meng-jie¹, YAN Shuang-yong², SHI Li-li^1,3, SUN Ning¹, ZHANG Xin^1,3, DING De-liang^1,3, BIAN Jia-bin^{1,3,Corresponding Author}, WANG Song-wen^{1,3,Corresponding Author}

1. College of Agronomy and Resource Environment, Tianjin Agricultural University, Tianjin 300384, China;
2. Tianjin Rice Research Institute, Tianjin 300384, China;
3. China-Japan Joint Center on Palatability and Quality of Rice in Tianjin, Tianjin 300384, China

Received:2018-09-18 Online:2018-12-20 Published:2019-11-12

Abstract

Abstract: Polymorphisms were evaluated in 51 varieties using 600 KASP markers. The results showed that 373 markers could accurately determine the haplotypes of the germplasm, develop DNA fingerprints, and identify chromosome fragment substitution lines, among which two chromosomal fragment substitution lines carry the NOG1 gene and the GS5 gene, respectively. A natural population consists of 51 varieties, with the diversity 568.50. The polymorphism of 341B and HC-66（indica）is 0.82, and the polymorphism of 341B and IPM（indica）is 0.80. 373 markers can be used for breeding by design and module breeding.

Key words: rice, KASP marker, polymorphism, chromosome fragment substitution system

CLC Number:

S336

CHENG Meng-jie, YAN Shuang-yong, SHI Li-li, SUN Ning, ZHANG Xin, DING De-liang, BIAN Jia-bin, WANG Song-wen. Evaluation of rice variety polymorphisms using KASP markers[J]. Journal of Tianjin Agricultural University, 2018, 25(4): 13-16.

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Evaluation of rice variety polymorphisms using KASP markers

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